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Genome organization of the vg1 and nodal3 gene clusters in the allotetraploid frog Xenopus laevis
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Kjiersten Fagnan
… data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on … presented work related to distributed data and workflow management.  …
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JGI Workshop at SIMB NP Meeting
… a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… all the work that went into this program was the feedback from the graduate student interns; “it changed what I want … interns. For him, it was a special moment to see interns go from being “intimidated and nervous” at the beginning of the … perspectives and views” helped her further develop management and supporting skills for the students. Being able to …
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Tanja Woyke Elected to American Academy of Microbiology
… is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is … genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One … in Nature , applied single-cell sequencing to decode genomes of bacteria and archaea from previously understudied …
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How to Target a Microbial Needle within a Community Haystack
… the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … the HCR-FISH+FACS targeted pipeline on North Sea metagenomes as a proof of principle, the team used a …
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Filling in the Plant Tree of Life
… food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… California (UC), Merced assistant professor Suzanne Sindi from the School of Natural Sciences and started a program … Arroyo lauded the partnership. Sindi also shared a message from Betsy Dumont , Dean of the UC Merced School of Natural … Huerta (2015 undergraduate intern): Just graduated from UC Merced and starting the Helena O. Mishoe …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by researchers at the … switchgrass has become an important species whose complex genomes are helping breeders understand how they can boost …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … genome sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, Baldrian’s team …
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Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota
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