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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … technologies for  biofuels and other bioproducts. Finally, understanding how brown rust disease resistance works in … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), with assistance from partners at …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers … genes are encoded on a single molecule of mRNA – in two species of green algae, Chlamydomonas reinhardtii and … (UC), Berkeley, UCLA, UC Davis, Brookhaven National Laboratory, Lawrence Berkeley National Laboratory, the U.S. …
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Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … user facility located at Lawrence Berkeley National Laboratory, and add additional gene function descriptions. … allowed us to pinpoint and rank biologically relevant and evolutionarily conserved genes that could be potential …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who … genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will … the JGI’s DNA synthesis and omics capabilities to enhance understanding of gene and genome function. Tapping into …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Transcription factors control …
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, … some, including shrub willow  Salix purpurea , employ the evolutionary strategy we are far more familiar with: … team, which included scientists from Oak Ridge National Laboratory and the U.S. Department of Energy (DOE) Joint …
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … layers. The architecture of these algorithms, inspired by communication networks found in nature, allows …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a … on three human chromosomes: Lawrence Berkeley National Laboratory researchers were studying Chromosome 5, which … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) to develop a process for more …
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The JGI announces 2024 awardees for our Community Science Program annual call
Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, who heads JGI’s … in: sustainable biofuel and bioproducts production, global carbon and nutrient cycling, and biogeochemistry. You can …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … we’re highlighting genomic science research that feels especially relevant to living on a changing planet. … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of …
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