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Proposal of Patescibacterium danicum gen. Nov., sp. nov. in the ubiquitous ultrasmall bacterial phylum Patescibacteriota phyl. Nov
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2024 Progress Report
… use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed 13,700 metabolomics … sugarcane genome sequence. The JGI  partnered  with synchrotron user facilities to define the structure and function …
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JGIota: A Surprise for Chloroflexota — The First Flagella!
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… contains about 6% of the human genome . They discovered genes linked to conditions such as cardiovascular disease, … about 2% of the human genome. They were interested in genes involved in repair of DNA damage, and those associated … 3% of the human genome. They wanted to learn about the genes implicated in the development of breast and prostate …
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Frigoriflavimonas asaccharolytica gen. nov., sp. nov., a novel psychrophilic esterase and protease producing bacterium isolated from Antarctica
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JGI@25: Studying Sorghum’s Survival Skills
… and hot temperatures, sorghum plants can photosynthesize and thrive — some varieties grow their leafy stalks 16 … each variety stores sugars and sequesters carbon. 2015: Epigenetic Control of Drought Tolerance in Sorghum (EPICON) … over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis improve the genome’s accuracy, and …
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Medium-Chain Fatty Acid Synthesis by “Candidatus Weimeria bifida” gen. nov., sp. nov., and “Candidatus Pseudoramibacter fermentans” sp. nov.
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Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov.
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Frederik Schulz
… pipeline and enrichment metagenomics for terrestrial protists. These approaches enable novel insights into the … et al. 2024. Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake. Microbiome . Camargo A. et al. 2023. Identification of mobile genetic elements with geNomad. Nature Biotechnology . Schulz …
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Taking Stock of the Known and Unknown Microbial Space
… biodiversity. Using publicly available genome sequence data generated over the past three decades, their study assesses … the estimated diversity of Bacteria and Archaea With phylogenetic diversity standing in as a representative measure of biodiversity, they used five universally conserved, protein-coding marker genes on nearly 2 million genomes, …
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