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Natural Prodcast Episode 11: Marnix Medema
… there is many. I would say, perhaps, half of or more of the users of antiSMASH are not in this field either. So they … in the GNPS framework in San Diego belong to the same samples as genomes that are in GenBank and which gene … collaborate, let us know. Find out more at jgi.doe.gov/user-programs . Thanks and see you next time! … Episode …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… fungal guilds in a range of different locations. They sampled soils in four forest ecosystems, extracted RNA to … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … understanding of multiple forest systems, this work sets up protocols and pipelines that other teams can use around the …
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Informatics Advisory Committee
… objectives for the JGI’s data science, informatics and information technology (IT) activities and strategic plan. The IAC serves as the key external advisory panel for the JGI’s Director, CIO, and …
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FICUS-NERSC/KBASE
Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the … checking such factors as genome size, polymorphism level, sample quality and availability, etc.   During scientific …
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Natural Prodcast Episode 22: Alison Narayan
… because I have this question, we have this discussion internally in my group quite frequently. OK, so imagine this … And so we wanted a profile across that protein family to sample that sequence space and have as diverse of a protein … the substrate scope of many enzymes. And so we have limited information. There’s a lot of work to do, and that makes …
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JGI Portals
… developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes … … GOLD is a web resource for comprehensive access to information regarding genome and metagenome sequencing … resource for comparative analysis and annotation of all publicly available genomes from three domains of life, in a …
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Biotech Partners
Biotech Partners provides integrated and high-touch programs that empower underrepresented high school students …
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Introducing New Members of the JGI User Executive Committee
The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of … of the University of Arizona! They join nine other JGI users already serving on the UEC – go here to view the full … archaea, expressed his interest in giving a voice to JGI users who feel that certain data sharing policies fail to …
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Philympics 2021: Prophage Predictions Perplex Programs
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… support so that they can deliver these programs to our students.”   Following this, several … program committee members including JGI Deputy of Science Programs and Internship co-founder Axel Visel and UC Merced …
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Protocol for condition-dependent metabolite yield prediction using the TRIMER pipeline
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Introducing New Members of the JGI User Executive Committee
The JGI welcomes three new members to their User Executive Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here to view the full … is also interested in reaching and engaging with new international collaborators and other scientific organizations. …
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