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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial … of microbial life. By leveraging massive user-generated datasets at the JGI and other publicly available data, … observed in nature. Because of its enhanced neural network architecture, GenomeOcean has shown improved …
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Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
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Network Modeling of Complex Data Sets
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of firsts, including the flagship internship … and the Joint Genome Institute. AAMU students spent two months in Berkeley, California honing their scientific … Our interns say their experiences allowed them to:  Learn new skills. Experience industry-level work and coding. …
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A Sorghum Pangenome Opens More Doors to Discovery
… genetic variation more closely with gene function and find new ways to implement traits of interest in crops. … with resequencing of 1,984 cultivars and landraces, these data capture the diversity of this crop across geographic … for future analysis and discovery. “We're building the data sets that are needed to build the algorithms of the future. …
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Scaling Up Existing Skill Sets
… and Systems Biology Mentor: Guohong Wu, Plant Comparative Analysis What effect has your summer internship with the JGI … a great opportunity to study and learn something totally new during my Ph.D. What is/has been one of your favorite … I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) metagenomes … sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for … part of our data analysis plan mapping of short-reads datasets (metagenome or metatranscriptome) to a relevant …
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The IMG/M data management and analysis system v.7: content updates and new features.
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… of harmful chemicals found in pesticides and refrigerants. Researchers found a number of surprising traits in  … The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the last two decades, Stable Isotope Probing (SIP) has opened vast … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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The JGI Data Portal: Improving User Experience
… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from … Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers with unique areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of …
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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
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