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Tanja Woyke
… 2018-2023 Highly Cited Researcher, Biology and Biochemistry, … van Niel International Prize for Studies in Bacterial Systematics 2020 Elected fellowship in the American Academy of … (2020-current) Advisory Committee member for the Center for Biotechnology and Bioinformatics at Virginia State …
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An Integrated Dataset to Understand Ecosystem Interaction
… relationship between poplar trees and their microbial partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  … Scientific Data connects molecular features to large ecosystem-level processes for the first time. By collecting data …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and … They are abundant representatives of deep subsurface ecosystems. A team of researchers described how the viruses … they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. They looked …
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Open Frameworks Training the Next Generation of Scientists
… (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology Knowledgebase (KBase). The JGI and KBase are … (Module 5) – that enables student-curated  FAIR (findable, accessible, interoperable, and reusable) data, readily … These programs are resources designed to prepare early career researchers with real world science skills and …
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A Plant Root Atlas for Tracking Developmental Trajectories
… contribution to the paper also aligns with his DOE  Early Career Research Program (ECRP) award, which is also focused … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  … From our partners … From our partners …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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AmiGO: online access to ontology and annotation data
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… at Northwestern University, and researchers at the biotech company LanzaTech to develop a “cell-free” gene expression system. Developed through the JGI DNA synthesis Community … to both the project’s success and her own as an early career researcher. “We were able to study hydrocarbon …
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2024 Progress Report
… Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome … in studies of complex biological and environmental systems. We optimize our service to the community through … We closed our 2018 Strategic Plan at the end of September, 2023 with over …
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JGI@25: From Life at the Extremes to Editing Genomes
… lab at UC Berkeley seeks other enzymes in the CRISPR-Cas system. For the past few years they have partnered with JGI’s … Microbiomes (IMG/M) system’s immense collection of publicly accessible metagenomic datasets from a wide variety of … resulted in several papers, including one in 2018 on the discovery of miniature CRISPR-associated proteins that can …
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BOTany methods: accessible automation for plant synthetic biology
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Crysten Blaby-Haas
… in 2022 as lead of the Biomolecular Materials Initiative, a partnership between JGI and the Molecular Foundry, a … JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and engineering. She earned her PhD in … in metal homeostasis. She began her independent research career at Brookhaven National Laboratory (2015) where she …
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