Results

MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
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Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
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STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … group at the JGI, whose team uses a semi-automated, standardized process to carry out the onerous SIP sample …
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The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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Virus species names have been standardized; virus names remain unchanged
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … in situ hybridization (HCR-FISH). In contrast to standard FISH where a one probe adds one fluorescent …
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Protocols
… protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be … Tips for High Molecular Weight DNA extraction: … RNA Extraction Protocols: …
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User Support
… the use of an ORCID account with two-factor authentication enabled to log in. Check our Help Site for additional information, including a Login Walkthrough and FAQ . –– The …
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