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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
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Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … group at the JGI, whose team uses a semi-automated, standardized process to carry out the onerous SIP sample …
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The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for …
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JGI Advisory Committees Code of Conduct
… staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … on sustaining our record of excellence and respect, and for principles of integrity, safety and reliability. As … role models for the community, demonstrating the highest standards of ethical conduct guided by the JGI and Berkeley …
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Protocols
… protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA … can be found here . DNA Extraction Protocols: … Tips for High Molecular Weight DNA extraction: … RNA Extraction …
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Webinars on Offerings & Capabilities
… a list of webinars that can help you through the submission process by better understanding the capabilities and resources available for your project. Watch all the webinars here . You can find … … … Shining a Light: Advanced Photon Source Capabilities for FICUS Research shows researchers how to tap into the …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications … collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … fill in the gaps,” she added. DSMZ not only preserves a standardized culture collection of international renown, …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … to functions and fungal species. Initially, mapping RNA sequences this way was challenging, according to Martin. …
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The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
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