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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal … lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … lineages. To learn why, researchers analyzed 135 fungal genomes representing major fungal families, including those …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the … collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of Bacteria and Archaea (GEBA) initiative. “This project has helped to define the current shape of the …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… complexity At first glance, the slightly murky waters in the tube look like a scoop of stormwater, complete with … appointments at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … keeps its DNA more organized. “The big surprise of the project was to realize that these genome copies that are …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … the resources for free. 8.  Q: What makes a successful project? A: Combination of: DOE mission relevance Science …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The … (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … possible given the finite staff available to the Phytozome project. What will happen to Phytozome v12 URLs after August …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing … of Energy national user facilities – the DOE Joint Genome Institute and the Molecular Foundry – both located at … The collaboration between the JGI and the Foundry on this project highlights an  ongoing partnership that combines the …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) … and multidisciplinary nature of DOE mission science projects, this initiative aims to encourage innovative … and selection processes, making it difficult to propose projects that truly integrated the capabilities of more than …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … anything. The collaborative consortium behind the GROWdb project demonstrates not only how researchers can …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome … among lots of other things, he works on the Tiny Earth project, which you’ll hear him describe. [ Go here to learn … the laboratory of Jo Handelsman at the University of Wisconsin-Madison. You can find the podcast on Apple , Google , …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and … different organizations is discoverable and accessible. Linking the resources of powerful institutions like the JGI, … (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas …
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