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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… a wide range of industrial applications. The team was led by researchers at two U.S. Department of Energy national … organic matter before it re-enters the environment. Urine accounts for just 1% of wastewater, but it contains most of … performing activities similar to the specialized animal cells or osteoblasts that make HAp. JGI researchers …
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Small cells with big secrets
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JGI@25: Solving the Mystery of the Missing Oil
… Laboratory (Berkeley Lab) were on the scene collecting samples. Terry Hazen, a former Berkeley Lab environmental … developed at Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, mobilize … of multiple forest systems, this work sets up protocols and pipelines that other teams can use around the world. These … functions across different forests. Primary metabolism, cell activity, and fungal development looked quite alike for …
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
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ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A … in large data sets, their work may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv University in …
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Webinar: SIP technologies at EMSL and JGI
… How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more the better. We want to put at … 2. Q: What would a typical turnaround time be for data once samples are in hand at JGI? A: It takes a few months to go … has to go into the plant, out through the roots, into the soil, and then picked up by the rhizosphere, then that takes …
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