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… to this fundamental work, he established an efficient switchgrass transformation pipeline and, in collaboration … with industrial partners, generated hundreds of transgenic switchgrass lines in an effort to create improved varieties … al. 2014 Genome Diversity in Brachypodium distachyon : Deep Sequencing of Highly Diverse Inbred Lines 2014 Plant Journal …

… environmental samples. This work combines third generation sequencing and machine learning to enable fast, accurate … A read simulation tool for generating synthetic sequencing data from genomic sequences …

… metagenome assemblies. Q&A from the Webinar: Input & sequencing Q(uestion): How much DNA is needed for “regular” … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …

… and viruses vastly outnumber the microbes. Advances in sequencing technologies and computational tools have … in collecting and submitting their microbiome samples for sequencing at the JGI cannot be overstated. Their … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …

… We have developed Regulon Identification by in vitro-sequencing (RIViT-seq) to identify RNA polymerase-sigma … We are also utilizing DNA-Affinity Purification (DAP) sequencing to express hundreds of transcription factors and …

… Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library Construction … announcing a high-quality reference sequence of the complex switchgrass genome , using samples from common gardens … network of common gardens and are exploring improvements to switchgrass through more targeted genome editing techniques. …

… samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — …

… and Archaea : Under the umbrella of the GEBA, the JGI is sequencing thousands of bacterial and archaeal genomes from … — providing a perspective on giant virus diversity, and how sequencing and bioinformatics have sped up the study of … genes from bacteria. Schmutz was also involved in  a switchgrass study that delved into the nuances of the …