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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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Alabama Agricultural & Mechanical University Internship Program
… California honing their scientific skills and collaborating with their mentors and fellow interns. Inspired by the success of the UC … program, they left the JGI more confident and ready to tackle real-world scientific issues. Our interns say …   Want to see past projects? Read more below         …
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An Automated Tool for Assessing Virus Data Quality
… have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … to recover the genomes of these viruses and associate them with their microbial hosts. However, assembling viral … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 … The metagenomes were also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated …
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The JGI Data Portal: Improving User Experience
… download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only … so our joint team started small, in the tradition of agile design and development,” said Linda Setchell, a Truss … more complex types of research without requiring them to build their own tools to do so.” The JGI/Truss team has …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a scientific … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … amino acids are assembled, which then band together to build proteins. What Wint and her mentors discovered in the …
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Natural Prodcast
… metabolites, and specialized metabolites all refer to the chemicals that make species unique and different from one another. They are incredibly important to medicine, the environment, and human health. As the JGI acts on its goals in — and builds out its capabilities for — secondary metabolism …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and …
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j5 DNA Assembly Design Automation
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly … found inside mitochondria, the energy-producing structures within cells. This is the largest dataset of its kind ever …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … out every two weeks. This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in … BEN: You know, to say, man-made compounds. How can you design a drug, right? You design drugs  based on certain …
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Mike Sneddon
… Genome Institute. His team of engineers and scientists builds and operates the data and compute platforms and … annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for … science.  Dr. Sneddon is an accomplished leader in data, software, compute, and AI for large-scale genomics and lab …
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