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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … that produces those. So it’s not a hard and fast rule, but, generally, animals do not have secondary metabolism that we …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring … cutting-edge capabilities to help advance their science by generating data in three overarching categories: DNA … needs, the JGI deploys state-of-the-art sequencers and platforms dedicated to synthesis, single-cell analyses and …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a previous effort, an international consortium recommended specific … perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps …
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… the 2023 Highly Cited Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … to revive the art of hands-on microbiology and experimental validation.  Microbes run the world, playing key roles in …
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Metabolic Modeling of Fungi
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant challenge in … available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — and is capable of … address some of the most pressing challenges of our time. For more information, please visit  …
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John Vogel
… he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … pipeline and, in collaboration with industrial partners, generated hundreds of transgenic switchgrass lines in an …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … species.  Students collect fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. …
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