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Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola
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Close association of RNA polymerase II and many transcription factors with Pol III genes
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Bidirectional titration of yeast gene expression using a pooled CRISPR guide RNA approach
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Gene Expression: From On-Off Switch to Dial
… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene … team says that this experiment outlines a roadmap that is transferable to other systems, expanding the technologies … of betaxanthins. They used combinations of single guide RNA, or a single RNA piece that recognizes a particular area …
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Frequently Asked Questions: Project Management
Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including … but are provided as general guidance. … Guidance on international shipments can be found in the Sequencing Sample … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle▿ §
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … a massive analysis of 1.3 billion proteins with massively parallel computations.”  Guided by JGI scientists, the team … call “known knowns” — that is, they are similar to genes with known function. Others are called ‘known …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as … cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … access and analyze data on scales ranging from single genes and individual genomes to metagenomes to systems-level …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … nearby forests with the right tools to track infection. The parallel development of the SODmap Mobile app enabled SOD … Tyler BM et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis . …
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High-quality RNA extraction and the regulation of genes encoding cellulosomes are correlated with growth stage in anaerobic fungi
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … algae, but many kinds of algae exist. During the course of evolution, algal organisms sprung up in almost all branches … have unveiled PhycoCosm in the Nucleic Acids Research journal. The genome portal reinforces the JGI’s new strategic …
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Genetic Transfer in Action: Uncovering DNA Flow in an Extremophilic Microbial Community
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