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Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria
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Multiple Origins and Rapid Evolution of Duplicated Mitochondrial Genes in Parthenogenetic Geckos (Heteronotia binoei; Squamata, Gekkonidae)
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Microbial co-habitation and lateral gene transfer: what transposases can tell us
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Transfer RNAs with novel cloverleaf structures
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii show a … loss, rampant gene duplications, and even more ancient gene transfers from bacteria have all armed the plant with an …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … They sampled soils in four forest ecosystems, extracted RNA to understand gene expression, and developed new tools …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … nearby forests with the right tools to track infection. The parallel development of the SODmap Mobile app enabled SOD …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … took place a million years apart: the individual with a maternal  B. distachyon parent (D plastotype) some 1.4 million …
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Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle▿ §
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … anniversary, published in  Nucleic Acids Research .  ID’ing RNA viruses with ease : Searching for RNA sequences within a … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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