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Viral niche-partitioning: Comparative genomics of giant viruses across environmental gradients in a High Arctic freshwater-saltwater lake
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Partnerships: Myco-Ed
… Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students … of new fungal species.  Students collect fungi, sterilize tissue, isolate genes and more. The metadata then goes …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell … in the collection, Genomics-enabled analysis of specialized metabolism in bioenergy crops: current progress and … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Natural Prodcast Episode 2: The Primer, Part 2
… still almost certainly unusual things that we don’t recognize, because the only way to find things is by comparison. … of primary metabolism. So a lot of the genes and the DNA that’s used for secondary metabolism, they are copies … often use primary metabolites as building blocks to produce novel molecules. And so we’ve got glycosides being made into …
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Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … More recently, these long-reads have been applied to DNA methylation analysis as well as improving metagenome … to clean energy generation and environmental characterization and cleanup. The JGI provides integrated …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … specific guidelines and best practices for characterizing uncultivated viruses. Following up on those guidelines, … regulated by viruses in their environments. Environmental DNA sequencing can help scientist to recover the genomes of …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat … this group is unexpectedly powerful: they can whip up dozens of complex natural products, including new ones. The … work shows that anaerobic fungi might be a new source of novel compounds to help bolster the bioeconomy. Summary A …
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Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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JGI Advisory Committee
… is convened by the JGI Director to provide guidance on the Institute’s strategic, scientific, technical, informatics, … body, the JAC includes representatives from all specialized JGI advisory and executive committees, such as the User Executive Committee, the DNA Synthesis Science User Advisory Committee, the Fungal …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology … on Microbiome Data Science. His group is developing novel methods for enabling large-scale comparative analysis, as well as mining and visualization of big data. … BA in Biology, Aristotle University of Thessaloniki, Greece PhD …
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