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Comparative genomic and physiological analysis provides insights into the role of Acidobacteria in organic carbon utilization in Arctic tundra soils
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … particularly sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro …
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A Novel Freshwater to Marine Evolutionary Transition Revealed within Methylophilaceae Bacteria from the Arctic Ocean
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Gallionellaceae in rice root plaque: metabolic roles in iron oxidation, nutrient cycling, and plant interactions.
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … DNA sequences that code for CRISPR systems, which help bacteria resist foreign genetic elements by incorporating …
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Reactive iron, not fungal community, drives organic carbon oxidation potential in floodplain soils
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British Columbia, … it was worth putting that time into. ALISON:  What was the role of potential collaborators? Like, what did you pitch to …
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Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … Single Cells Group helped better-understand what the sulfur-oxidizing, carbon fixing bacterium was doing in the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … boundaries by applying AI methodologies to unravel their roles,” Pavlopoulos said. “Consequently, we have amassed an … to that habitat.”  Taxonomic analysis found that the majority of these protein families belonged to bacteria and …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … in Nature and Medicine.” It’s obviously focused more on the bacterial side of the field, and it’s a little hard to find … This the third episode of Natural Prodcast, and the third and final part of our …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … data set on the IMG portal. The class discovered Actinobacteria, Acidobacteria, and Proteobacteria to be the most … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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