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Genome Insider
… The Genome Insider podcast brings listeners into the science that the JGI makes possible. … and fungi to microbes and viruses. Listen in to explore the data that illuminates biology, and hear how it could power …
Learn more
Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of … scientific research from a broad range of disciplines. Three calls fall under the umbrella of our CSP: The … accepted proposals, sequencing, synthesis, metabolomics and analysis will be performed by the JGI at no cost to the user. …
Learn more
Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … wanted to be true to my roots, and always work with marine systems because that’s just where my innate curiosity and … Sequencing Program, and they worked with us to sequence two genomes. Those were of Salinospora tropica and arenicola . …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting …   Learn more about our individual calls and other opportunities to work with the JGI …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a … of complex biological, earth, and environmental systems for energy and infrastructure security. In … that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 … when these records will be made available again within NCBI systems. In addition, the JGI issued a Request for …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… metabolites for multiple applications. The planet’s microbial diversity is immense, yet much of it remains … and the tools to compare them are available on the JGI’s Integrated Microbial Genomes & Microbiomes ( IMG/M ) portal. … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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A User-Centered Approach to Accessing JGI Data
… through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a … through a kingdom portal (assemblies + annotations) For IMG & Mycocosm: Data that is associated with an ITS project … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Mining Metagenomes for Cas Proteins
… discovery was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, … the the Lawrence Berkeley National Laboratory’s Sustainable Systems Scientific Focus Area is funded by the U.S. …
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Finding the Fermenters
… Berkeley National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products … metagenomics. Taking on a Research Scientist position in 2007, she switched gears from metagenomics to single-cell … primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 and assumed …
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Integrative analysis of multimodal mass spectrometry data in MZmine 3
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