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Jeremy Schmutz
… back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the bleached, skeletal … that on a catastrophic scale from Baja California north into Oregon and beyond. The disease is known more commonly … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute … more plants are studied? Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing … allowed us to pinpoint and rank biologically relevant and evolutionarily conserved genes that could be potential …
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Uncovering Novel Genomes from Earth’s Microbiomes
… in regulating nutrient cycles, as well as gaining insights into potential applications they may have in a wide range of … repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis
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Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants …
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Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants
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Disclaimer
… NOTICE Information from this server resides on a computer system funded by the … With respect to documents available from this server, neither the United States Government nor … so, for U.S. Government purposes. All documents available from this server may be protected under the U.S. and Foreign …
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Cataloging the Microbes that Manage the Health of River Systems
… researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … river health diagnostic systems to monitor for and identify land use or water quality changes. Summary Rivers are key … of watershed ecosystems, where rain or snow drain into such bodies of water before heading out to bays and …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… all fungi, and found that some of these genes have moved from the mitochondria into the nuclear genome over evolutionary time. They also discovered more than 6,000 … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a scientific … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my first publication and it feels so …
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