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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … sequencing and analysis. “Using a technique called metagenome binning, we were able to reconstruct thousands of … Science Program and was already available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. …
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
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Identifying the Microbial Cleanup Crew at a Superfund Site
… break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI … to the cleanup by continuing to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. …
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Special Initiatives & Programs
… and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on an …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … portals and tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of …
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Marine Microbe Contains Multitudes
… periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, … sequenced community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of … software suite, BBTools , and relying on the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Natural Prodcast Episode 6: Marc Chevrette
You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … to unpack experimentally. But there’s a couple of different systems where people have made strides in that area. Where I … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the …
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The parallelism motifs of genomic data analysis
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