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Integrative analysis of multimodal mass spectrometry data in MZmine 3
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic … The genome and metagenome data are available through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) platform. … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … First, they scanned over 26,000 publicly available metagenomes in the JGI's IMG portal for mitochondrial … systems for energy and other applications. All annotations, comparative tools, and visualizations are publicly available …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. …
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Game On: High School Students Drive Everglades Metagenomics Study
… email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) … The class was also able to receive training for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and … Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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Strain Engineering
… types, in which DNA-based molecules can be chromosomally integrated into a taxonomically diverse suite of microbial …
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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … sequencing and analysis. “Using a technique called metagenome binning, we were able to reconstruct thousands of … Science Program and was already available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. …
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Soil virus offers insight into maintaining microorganisms
… data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … chitosanase sequences were retrieved using the  JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG suite is a community resource for comparative analysis and annotation of all publicly …
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