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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … are dominant carbon and nitrogen fixers in alpine and high latitude ecosystems, deciphering their internal … finding that each lichen partner can sexually reproduce: genetic recombination during sex could increase the fitness …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to map the … the genome required a custom pipeline and techniques. High quality primary assembly not only includes a full …
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Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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Jeremy Schmutz
… species and their impact on cotton improvement. Nature Genetics 52: 525-533. Lovell, JT et al. 2018. The genomic … soybean. Nature 4637278: 178-183. … Thomson Reuters Highly Cited Researcher/The World’s Most Influential … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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Strain Engineering
The focus of this group, in recent years, has been to bring … to bacteria, yeasts and algae previously with little to no genetic tools enabling heterologous expression and … The developed strains represent an additional phase of user-accessible project types, in which DNA-based …
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ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
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DOE Metrics
… (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2024 DOE Metrics There … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species as diatoms and … Institute State University, was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
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High-Resolution Linkage Map and Chromosome-Scale Genome Assembly for Cassava (Manihot esculenta Crantz) from 10 Populations
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Partnerships Development Team
… works closely with the Berkeley Lab Intellectual Property Office to facilitate these new interactions.  The PDT … provides the scientific community at large with access to high-throughput sequencing and other resources at the JGI … technology called chassis-independent recombinase-assisted genome engineering (CRAGE), which offers single-step genomic …
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