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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single … meetings of the three teams it was clear that a larger collaborative effort would be far more effective in …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US … datasets are searchable from the National Microbiome Data Collaborative. The published river microbiome datasets are …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … Sciences Research Center  Alexander Fleming. “This was a massive analysis of 1.3 billion proteins with massively … the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  …
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JBrowse: a dynamic web platform for genome visualization and analysis
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify … in the what? 15th, 16th century.  ALISON: Yeah, I lived in Massachusetts for a while. DAN: There you go. So you’ve …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Soil metabolomics: Deciphering underground metabolic webs in terrestrial ecosystems
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the …
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SIMILE enables alignment of tandem mass spectra with statistical significance
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities … Synthetic Biology Informatics Group : a team that develops data science tools for workflow management and novel … automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables …
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2024 Progress Report
Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are … for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …
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