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The Genomic Standards Consortium
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including …
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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … of Energy, the Gates Foundation, the Advanced Research Projects Agency-Energy (ARPA-E) and the United States Agency … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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A second special issue of Standards In Genomic Sciences from the Genomic Standards Consortium
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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The genomic standards consortium: bringing standards to life for microbial ecology
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … JGI group has been wonderful to collaborate with, and this [project] wouldn’t have been possible without their …
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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 …
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UC Merced Interns Reflect on Their JGI Summer Projects
… UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission of the U.S. … develop presentation skills as well as build their network in the field of genomics and scientific research. The topics students worked … Intern: Sidharth Babu (undergraduate) Mentor: Zhong Wang …
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Synthetic Biology Lab
… The Synthetic Biology lab is divided into a DNA synthesis production group and a … to improve automated assembly pipelines bringing in new technologies, in particular through adoption of lab … For further details, please reach out to the Group Lead …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety …
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