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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … Berkeley National Laboratory, is committed to advancing genomics in support of DOE Office of Science Biological and …
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Disclaimer
… resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by system or security personnel. … neither the United States Government nor the University of California nor any of their employees, makes any …
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JGI@25: Using Team Science to Build Communities Around Data
… for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … “We currently have 19 genomes sequenced, 15 that are in sequencing or assembly right now, and eight more that we are … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … metagenome assemblies. Q&A from the Webinar: Input & sequencing Q(uestion): How much DNA is needed for “regular” … Note that beyond quantity, input quality (i.e., presence of “intact” high-molecular weight DNA) is an important …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER … is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, … access to diverse datasets that deepen our understanding of how organisms interact with each other and with their …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … technology.] BETSY PARKINSON: OK. DNA affinity purification sequencing. And so the way this essentially works is you will mix together your receptor of interest with genomic DNA, and then allow that to bind. Your receptor also …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … over 1,000 metagenomes and established standardized sequencing protocols so that researchers could compare … was also generated. The 3.8 trillion bases or Terabases of sequencing data, along with geochemical and geospatial …
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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is collaborating with others to develop healthier … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Silver age of GOLD introduces new features
… matured from six projects on a spreadsheet into a flagship  genomic metadata repository, making curated microbiome … genomics analysis initiatives. GOLD not only curates sequencing projects carried out at the U.S. Department of … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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The Case for Conservation
… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … The genome assemblies highlight the multiple advances in sequencing technologies applied to the effort. The Impact … to fully sequence the fire moss genomes ran the gamut of sequencing technologies, from making a bacterial artificial …
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