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A Community Resource for Secondary Metabolite Researchers
… compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites …
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Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
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Dan Rokhsar
… joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational … towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm … City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Cataloging the Microbes that Manage the Health of River Systems
… Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … States. They also provided multiple access points to the information. The team harnessed a community-science program to … can successfully partner with DOE user facilities and resources on such large-scale multi-omic data efforts, but …
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The Cassava Genome: Current Progress, Future Directions
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Uncovering Novel Genomes from Earth’s Microbiomes
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … A New Path for Metagenomics Researchers Building upon these resources, KBase, a multi-institutional collaborative …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably … and colleague Fred Gmitter, a UF/IFAS professor of citrus breeding genetics and longtime JGI collaborator, are senior …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … use existing data as well as generating additional genomic resources to address long-standing evolutionary ecological …
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Synthetic Biology Lab
… technologies to the broader community.  We focus our efforts on integrating database mining and sequence design … developed and continue to improve automated assembly pipelines bringing in new technologies, in particular through … For further details, please reach out to the Group Lead …
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Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement
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Better Genome Editing for Bioenergy
… tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it to the correct sequence to snip — but … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User …
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