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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… with crayons in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … higher-level classifications of virus groups (phyla.) The new sequences are filling in some gaps on existing virus … address some of the most pressing challenges of our time. For more information, please visit  …
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JGI Welcomes New UEC Members
… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and … results are in and JGI extends a warm welcome to the three new UEC members. They are: Kathleen Greenham of the …
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Webinar: MycoCosm Tutorial
… 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our … user community inputs. We also have the potential to create new EcoGroups – reach out to us. 3.  Q: Can you use NCBI … While are still working on finalizing the tree and related publication the tree is still in development and not …
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2024 Progress Report
… from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department … Genome Institute has continued its journey to realize our new vision to, “ Lead genomic innovation for a sustainable …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science … moved from the mitochondria into the nuclear genome over evolutionary time. They also discovered more than 6,000 …
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To … out. 1st floor 2nd floor 3rd and 4th Floors The JGI mural on the 3rd floor whimsically references dozens of iconic JGI … the frontiers of environmental and energy genomics.  For more information about the science depicted, click here …
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Webinar: PhycoCosm Tutorial
… about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative … trees are based upon? A: This is still work in progress as new genomes are being added. We do plan to publish the tree … again how did you pick genomes to be on the genomes portal? For the taxa I work on, there are 7 genomes on NCBI but your …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… . Research shows that flagella were lost in other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The Impact … don’t have flagella, meaning they were lost in the evolutionary adaptation to marine environments. These …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to the JGI User Executive Committee (UEC) : … of members. Each of the researchers had particular reasons for wanting to serve on the UEC. Hatzenpichler, who studies … JGI research priorities.” U’Ren, who studies ecological and evolutionary factors shaping the assembly of fungal …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   … needs, the JGI deploys state-of-the-art sequencers and platforms dedicated to synthesis, single-cell analyses and … in strain engineering and functional assays and supporting new methodologies to enhance the integration of various data …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals … white paper focused on duckweed through the  CSP New Investigator call . It is the first project to have … and the proposal focuses on investigating the repeated evolution of three traits relevant to DOE interests: …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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