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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host dynamics in … While an ever-increasing number of phage and virus genomes have been assembled and reported …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint … metabolism is based on primary metabolism. It’s an evolution of primary metabolism. So a lot of the genes and … Episode Transcript … This the second episode of Natural Prodcast, which continues a conversation from the …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring a dark room with a … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining … artificial intelligence to aspects of research questions Another intern summer has closed at the U.S. Department of …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … While are still working on finalizing the tree and related publication the tree is still in development and not … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my first publication and it feels so …
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Expanding genomics of mycorrhizal symbiosis
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have … characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in the future, the evolutionary past may hold key insights. The way that plants …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, … “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … are important from the standpoint of phage-bacterial coevolution and are also useful tools in CRISPR-Cas …
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Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Genetic determinants of endophytism in the Arabidopsis root mycobiome
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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