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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly … — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … genes. And gene family analysis showed that genes directing development of reproductive structures in seed plants were …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … forests. Primary metabolism, cell activity, and fungal development looked quite alike for each guild of … to map gene expression to functions and fungal species. Initially, mapping RNA sequences this way was challenging, …
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A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … with the right tools to track infection. The parallel development of the SODmap Mobile app enabled SOD Blitz …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Looking for BBTools? Find it here.  …
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Disclaimer
… NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by system or security personnel. … neither the United States Government nor the University of California nor any of their employees, makes any …
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … and it is a fiber model to understand the molecular development of cellulose. Cotton Genomes on Phytozome The … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Webinar: MycoCosm Tutorial
… While are still working on finalizing the tree and related publication the tree is still in development and not available for download. 9.  Q: Can I … forward and do manual, or experimental curation, or other characterization of these. Reach out to us if you’re …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … touch with the JGI.” Mentors: Yi Zhai & John Vogel Project: Characterization of Brachypodium distachyon root … journey.” Mentors: Deze Kong & Yasuo Yoshikuni Project: “ Development of a multiplex genomic integration system for …
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Leo Baumgart
… his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the … multiDAP-seq assay, a method that enables high-throughput characterization of transcription factor binding sites and … genomics capabilities through process automation and method development. …
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SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean
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