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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
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Transposon Mutagenesis Paired with Deep Sequencing of Caulobacter crescentus under Uranium Stress Reveals Genes Essential for Detoxification and Stress Tolerance
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about … Dr. Francisco (Paco) Barona- Goméz is a Principal Investigator at Cinvestav UGA-Langebio in Irapuato, … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … This is our interview with Nadine Ziemert, from the University of …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Looking for BBTools? Find it here.  …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … on stable and accurate computational methods for reacting subsurface flows, and evolved into scalable methods for … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … only about 3% of the planet’s landmass, peat moss and their subsurface bogs hold over 30% of the world’s carbon. “This … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … living everywhere from soils and stomachs to the deep sea are capable of doing a lot of unique things when it …
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