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Sequencing Submission Requirements for DNA Synthesis
… Sequence files for all constructs should be emailed to  Miranda … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of resequenced sorghum … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics
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A Comparison of Microbial Genome Web Portals
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Quality MAGnified
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Natural Prodcast Episode 22: Alison Narayan
… Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … arisen from. DAN UDWARY: OK, so sort of a phylogenetic reconstruction kind of a thing. ALISON NARAYAN: Exactly, yeah. … synthesis where our gold standard was, if you’re doing three reactions a day, like that’s a good level of …
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Secondary Metabolites Program
… Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and …
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JGI on the 2020 Highly Cited Researchers List
… fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … part of a consortium that  released a very high quality reference genome sequence of green millet ( Setaria viridis … an international consortium, they  conducted a large-scale comparison of 135 fungal sequenced genomes to understand how …
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … JGI Plant Annotation pipeline, which provides high quality comparisons of these genomes within themselves and to other … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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The More the Merrier: Making the Case for Plant Pan-genomes
… with two genome copies, one from each parent. Having three or more genome copies from additional parents or … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … the JGI’s  Community Science Program , the team generated reference genomes for  B. hybridum and  B. stacei , as well …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …
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Three founding ancestral genomes involved in the origin of sugarcane
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