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Metagenomic reconstructions of bacterial CRISPR loci constrain population histories
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Comparative Transcriptome Analysis of Methylibium petroleiphilum PM1 Exposed to the Fuel Oxygenates Methyl tert-Butyl Ether and Ethanol▿ †
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The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation
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DOE Metrics
…     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. … sequencing production line to accommodate data migration requirements. Q3 actual Operating Hours reflect a delay in …
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Learning to Look
… answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … a computer could use to conduct a similar type of search in microbial and metagenomic databases. In this case, the … and pathogenicity, in turn affecting the microbe’s own eukaryote host. As their small genomes can be easily …
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A scoutRNA Is Required for Some Type V CRISPR-Cas Systems
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Natural Prodcast Episode 5: Brad Moore
… and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … Oceanography. And Brad and I, Alison, have known each other for quite a while because Brad was my postdoctoral advisor.  … Brad: Oh my goodness. Those were good years, Dan!  Dan: For too many years. Brad: And now look, you’re like, famous. …
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Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment
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Protocols
… protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA … can be found here . DNA Extraction Protocols: … Tips for High Molecular Weight DNA extraction: … RNA Extraction …
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Webinars on Offerings & Capabilities
… understanding the capabilities and resources available for your project. Watch all the webinars here . You can find … … … Shining a Light: Advanced Photon Source Capabilities for FICUS Research shows researchers how to tap into the …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then … most of the known RNA viruses have been associated with eukaryotes. Along with the expansion of bacteria-associated …
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gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes
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