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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … calls. These documents have been shared with permission from the PIs who drafted them.  … to soil carbon storage during simulated range shifts of plant-fungal symbionts …
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Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … ever assembled. The team identified 15 core genes shared across all fungi, and found that some of these genes have moved from the mitochondria into the nuclear genome over …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for … hydroxyapatite, a high-value biomaterial with a wide range of industrial applications. The team was led by researchers … innovations for bioproduction and advance their utility across the bioeconomy. Summary Wastewater treatment involves …
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Novel bacterial clade reveals origin of form I Rubisco
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate … skills and work at the command line, manipulating huge amounts of data. I was excited to work on fungal …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … challenges.   Scanning the California oak woodlands from the air, large swaths of the bleached, skeletal remains … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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A unified initiative to harness Earth's microbiomes
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the … aims to advance genome science-based scientific research from a broad range of disciplines. Three calls fall under … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage …
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You Can Move, But You Can’t Hide
… entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature … The U.S. Department of Energy Joint Genome Institute …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … that the project had already received enthusiastic support from the JGI Director, Nigel Mouncey. Jonathan credits his … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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