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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving … a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and … ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the …
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Elucidating Essential Role of Conserved Carboxysomal Protein CcmN Reveals Common Feature of Bacterial Microcompartment Assembly*
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Bipartite graphs in systems biology and medicine: a survey of methods and applications
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Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
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A New Method to Correct for Habitat Filtering in Microbial Correlation Networks
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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
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Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium)
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Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota)
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management … because much is unknown about the diversity of organisms (taxonomy) and particularly those in processing … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Assemblathon 1: A competitive assessment of de novo short read assembly methods
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Global overview and major challenges of host prediction methods for uncultivated phages
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An expanded evaluation of protein function prediction methods shows an improvement in accuracy
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