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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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Assemblathon 1: A competitive assessment of de novo short read assembly methods
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A novel method to evaluate nutrient retention by biological soil crust exopolymeric matrix
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the … All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance , proposed data … and track record of the applicant.  Learn about the general review process or get details on the internal …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. … of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a … Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature …
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Manipulating the 3D organization of the largest synthetic yeast chromosome
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Assembly of Robust Bacterial Microcompartment Shells Using Building Blocks from an Organelle of Unknown Function
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles … program because of its relevance to understanding the assembly, function, and the behavior of microbiomes to … The team learned that some bacterial families carry genes for degrading monoterpenes such as α-pinene, as well …
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
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Stage-resolved gene regulatory network analysis reveals developmental reprogramming and genes with robust stem-preferred expression in sorghum
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to … Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic insights in lignin biosynthetic …
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