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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … the chemistry in order to start to make predictions about environmental roles of these compounds? Can we perform …
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JGI Portals
Our data platforms are a key resource for the broader scientific … constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
Gardeners and farmers around the country recognize that crop … plant species have adapted to their local environments; for example, crop and ornamental seeds sold for the upper … and are exploring improvements to switchgrass through more targeted genome editing techniques to customize the crop for …
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High-resolution metagenomics targets specific functional types in complex microbial communities
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. … one particular viral genome in action, they utilized a targeted technique called virusFISH. Using fluorescently …
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Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
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Scientific Advisory Committee
The Scientific Advisory Committee (SAC) is a board convened by the JGI Director to provide a scientific and technical overview of the JGI. The SAC is chartered to render advice, guidance, … sequencing, new sequencing technologies, and related informatics; overview of the scientific programs at the JGI; …
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Nikos Kyrpides
Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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