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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … SOD. Of the dozens of Phytophthora species, the most globally-recognizable relative of SOD is P. infestans , … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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A Genome-Wide Survey of Switchgrass Genome Structure and Organization
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et al. A sorghum pangenome reference improves global crop trait discovery.  Nature (2026). … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Wildfire-dependent changes in soil microbiome diversity and function
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) … The JGI provides users access to cutting-edge cell sorting, DNA amplification, and …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and … and here ), and the data has been used to better understand arsenic mobility and to better understand their roles in the global sulfur cycle. Copies are available online – click …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… The practices that support agriculture – such as efficiently using dwindling water resources and restoring and maintaining healthy soils – are at the heart of sustaining food and bioenergy security for a steadily … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … call “known knowns” — that is, they are similar to genes with known function. Others are called ‘known …
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A Complex Confection Decoded: Sugarcane Reference Genome
… Sugarcane was the last major crop without a reference quality … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and … by the ERDF project “Plants as a Tool for Sustainable Global Development” No. CZ.02.1.01/0.0/0.0/16_019/0000827. …
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Probing the active fraction of soil microbiomes using BONCAT-FACS
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights … was key to iron metabolism, and renamed it to Domain Related to Iron, or DRI for short.  A kaleidoscope of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … DAP-seq on GEO Accession Viewer …
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