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Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … the 1000 Fungal Genomes Project, which aims to provide a reference genome for each of the fungal families. …
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Expanding genomics of mycorrhizal symbiosis
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A compendium of bacterial and archaeal single-cell amplified genomes from oxygen deficient marine waters
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CSP Functional Genomics
Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … synthesis and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily … and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user …
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Earth BioGenome Project: Sequencing life for the future of life
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … of plant root microbiome and other microbiomes by providing reference genomes of the key community participants and …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … and metatranscriptome sequences, as well as individual reference fungal genome sequences assembled as part of its …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, …
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Visualizing in situ translational activity for identifying and sorting slow-growing archaeal−bacterial consortia
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Targeted diversity generation by intraterrestrial archaea and archaeal viruses
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not … tool Roux and his colleagues developed first worked on a reference dataset that included genome sequences known to be …
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