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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that … tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate … For further details, please reach out to the Group Lead …
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Single Cell Research Group
… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis … again how did you pick genomes to be on the genomes portal? For the taxa I work on, there are 7 genomes on NCBI but your …
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JGI@25: Studying Sorghum’s Survival Skills
… challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its drought and flood hardiness. Even … but other important crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for … strengths into other plants. A brief timeline of sorghum projects at the JGI: 2009: JGI and collaborators use …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… Mexico, and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products … him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …
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Natural Prodcast Episode 2: The Primer, Part 2
… so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … live in the root nodules of plants. And these guys were sequenced, and you can see that different Frankia have … has been really crucial.  DAN: Yeah, yeah. The more data you generate, the more knowledge you can generate. So …
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The Chlamydomonas genome project: a decade on
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Genomic Standards Consortium Projects
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … molecular features to large ecosystem-level processes for the first time. By collecting data from 27 different … Ridge National Laboratory is managed by UT-Battelle, LLC, for the U.S. Department of Energy under contract …
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  … All the sampling activities in Antarctica have been performed in the frame of italian expeditions of the Italian National Program for Antarctic Researches (PNRA),  funded by the Italian …
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Fungal Friends or Foes in Plant Roots
… health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal …
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A call for standardized classification of metagenome projects
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