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JGI@25: The Little Alga That Could
… a unique place in evolutionary history. Retaining ancestral features of both plant and animal cells, it shares nearly 7,000 genes with other organisms (a third of … Plant Datasets …
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Partnerships: Myco-Ed
… ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ … into undergraduate teaching laboratories with minimal overhead (cost of media, ITS sequencing and … and to reduce teaching-lab costs, we have partnered with the Arizona Genomics Institute where high molecular …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… Earth’s climate. Most methane is produced in environments without oxygen through a process called methanogenesis. … is not limited to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to … You don’t have tunnel vision anymore, only seeing the microbes you can grow in the lab — suddenly you see …
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Special Initiatives & Programs
… are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , … the minimum is 100 kb, and for metabolomics, at least 22 samples are required. If your proposed request falls … Proposals whose scope was not previously negotiated with the JGI will only be accepted pending available …
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Phylometagenomics of cycad coralloid roots reveals shared symbiotic signals.
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… help solve energy and environmental challenges.   Usually, plants have the upper hand against any kind of biomass … evolved these really tough cell wall materials that keep microbes — and the enzymes that would be produced by … of California Santa Barbara. So plants don’t break down without a fight, but it’s an important battle to fine-tune. …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And … eventually, their findings could help us grow better crops, with less impact on our planet. …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The … the appropriate contextual information, or metadata, stored with them. GOLD provides manually curated metadata resources … and capabilities. The most recent improvements include new features like a public API and ecosystem landing page, as …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are … also known as “polyploidy,” is common among flowering plants; at least once during their evolution, the genomes of …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the … 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… for a steadily growing worldwide population. Anuvia Plant Nutrients , a small Florida business producing bio-based plant nutrition products that target soil enrichment, is partnering with the U.S. Department of Energy (DOE) Joint Genome …
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