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A Plant Root Atlas for Tracking Developmental Trajectories
… the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in … future single-cell projects.” The Berkeley Lab  Biosciences Area has been leading efforts in developing and applying … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … seeks other enzymes in the CRISPR-Cas system. For the past few years they have partnered with JGI’s Microbiome … Cas9 with increased lifetime in human plasma. Nat Commun. 2017 Nov 10;8(1):1424. doi: 10.1038/s41467-017-01408-4. …
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Environmental Genomics Group
… and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to … .  Nature Biotechnology . 2020 Nov 9. Vyshenska, Dariia et al. (2023)  A standardized quantitative analysis … Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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Community Science Program
… sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance genome … call is for expansive projects that leverage a range of JGI capabilities, and also requires a Letter of Intent. The …
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JGI User Executive Committee Expands
… of Delaware. Along with the existing UEC members, their areas of study span the research interests of the JGI’s user … Baxter is a principal investigator at the Donald Danforth Plant Science Center, where his group focuses on … who has been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
JGI’s large-scale call included algal genomics as a focus area, and one of the accepted proposals came from Chris … relevant species. Another focus area was inter-organismal interactions, and two fungal proposals focus on symbiotic … Many fungi have beneficial symbiotic relationships with plants and bacteria; in many instances, fungal physiology is …
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Jeremy Schmutz
… from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  … BA in …
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JGI Scientists Pen Genome Watch Articles
… latest article, published January 27, is about engineering plants and their microbiomes for more sustainable … invited to present her work in London in December 2018 at a Symposium at the Royal Society. The editors at the Nature … authors of these pieces to represent diversity in research area, gender, as well as stage of professional development. …
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How Microbes Can Protect Plants in Drier Straits
New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to help make plants more resilient to drought. …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … Oh, the magical world of the cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy plant cell walls and therefore hold clues to how humans …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
Todd Anderson currently works to support understanding of plants, microbes and environmental communities that have … of this, he noted the new 25th anniversary mural that local Bay Area artist Nigel Sussman recently finished at the …
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How to Submit Sequencing Samples
… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … 1) Review JGI sample QC requirements and protocols Obtaining DNA and …
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