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The JGI leverages its existing partnerships and develops others providing … for our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …

… problems.  The mission of the National Energy Research Scientific Computing Center ( NERSC ) is to … The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly …

Harnessing BER-funded data resources, researchers built an interactive and comprehensive … from the  Hungate1000 project . They also used the tool to predict possible functions from 733 … metagenome-assembled rumen genomes. Finally, they used the tool to predict the fermentative end products of five …

Pharmacology there. We talked about several different pieces of her work, including bacterial quorum sensing and its … product biosynthetic pathways, which led her to a successfully funded JGI CSP project. And we also got to talk … a lot for sure. JACKIE: So this will definitely add to the toolbox of ways that people are genome mining. You have all …

Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match characteristics — creating … organisms have developed metabolisms that function with a toolkit of enzymes. It’s useful to differentiate these …

… fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not … the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like bacteria, not humans. With …

… how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first … specific target on the microbial cell’s membrane. Two decades ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating retroelement,” or DGR. The DGR …

… achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. Oh, the magical world of the cow stomach. Rumen – and … the Hess Lab at UC Davis. “It was a really huge effort in tool development and … that was really the foundation for …

As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI … genome-resolved metagenomes and will be implementing new tools in KBase to tackle the bioinformatic challenges …

… gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for growth yet essential for survival, may … Interspaced Short Palindromic Repeats) is the leading tool for accurately editing genomes, its effectiveness has …

Congratulations to the 2020 Highly Cited Researchers at the JGI! They are among those recognized by … 1% by citations for field and year in the Web of Science.” Less than 6,200 researchers working in 21 fields appear on … are part of a team that  developed CheckV , an automated tool to help researchers assess and improve the quality of …