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Automated annotation of scientific texts for ML-based keyphrase extraction and validation
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Natural Prodcast Episode 3: The Primer, Part 3
… basic science and the history of the field of natural products or secondary metabolism, depending on which term you … and actually get to the DNA sequence – sequences for the genes that code for the proteins that produce secondary … developed to the point that you could understand the genetics of secondary metabolism, it became possible to do …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental … synthesis superpower. Through a series of case studies, JGI scientific users share how they’ve worked with the JGI DNA … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Expanding Virophage Diversity
… viruses. Almost all known virophage genomes share only four genes in common: major and minor capsid proteins (MCP and … approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes … work also used resources of the National Energy Research Scientific Computing Center (NERSC) , which is supported by …
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Institutional User Agreements
An official with authority is usually an individual in a central office, such as President, Rector, CEO, …  If a PI changes academic institutions or a new PI is named during the performance period, your Project Manager must be …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… contains about 6% of the human genome . They discovered genes linked to conditions such as cardiovascular disease, … waged. In this JGI@25 video, Susan Lucas, former JGI Production Department Head and current ESnet Deputy Director of … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative has also utilized a very … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… target of extensive natural sampling and field experiments due to its potential for habitat restoration and as a … of switchgrass and is a key component in providing genetic variation available for selection to improve biofuel … in breeding efforts, and also because 8X switchgrass is generally thought to harbor less genetic and phenotypic …
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I-Min (Amy) Chen
… the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. Chen … she was Director of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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JGI@25: The Little Alga That Could
… of both plant and animal cells, it shares nearly 7,000 genes with other organisms (a third of those shared by both … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … work with Olivier Vallon of the French National Centre for Scientific Research on the Chlamy pan-genome and Marina …
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Genes and genome‐resolved metagenomics reveal the microbial functional make up of Amazon peatlands under geochemical gradients
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