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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for … Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in … been associated with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building upon these …
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Identifying candidate structured RNAs in CRISPR operons.
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I-Min (Amy) Chen
… tools for scientific applications developed at Berkeley Lab. Dr. Chen is currently the Microbiome Computational … of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in 2006, she was Director of … management and analysis system v.7.0: content updates and new features. Nucleic acids research Jan 2023 Camargo AP, …
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Introducing New Members of the JGI User Executive Committee
The JGI welcomes three new members to their User Executive Committee (UEC) – Jack … la Recherche Scientifique (CNRS) in October and maintains a lab at Michigan State University. She aims to help overcome … data. She is also interested in reaching and engaging with new international collaborators and other scientific …
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acCRISPR: an activity-correction method for improving the accuracy of CRISPR screens
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Rapid cell-free characterization of multi-subunit CRISPR effectors and transposons
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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
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IMG/M: a data management and analysis system for metagenomes
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JGI Welcomes New UEC Members
… results are in and JGI extends a warm welcome to the three new UEC members. They are: Kathleen Greenham of the …
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Community Science Program
JGI capabilities, and also requires a Letter of Intent. The New Investigator call is for PIs who have never led a JGI … makes the assemblies, gene annotations, and analyses available to the community at large. In most cases where the JGI provides more customized analysis, the …
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What Happens Underground Influences Global Nutrient Cycles
… by researchers. A missing gene from this mutant library leads to photosynthetic defects, offering insights into how …  under PNNL’s Soil Microbiome SFA, which aims for a systems-level understanding of the soil microbiome and its … facility that accelerates scientific discovery and pioneers new capabilities to understand biological and environmental …
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Accelerating Metagenomics Discoveries with Deep Learning
… to assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to … Genome R&D Group and is one of more than 100 scientists and systems engineers involved in computational work at the JGI. … chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant Pandey of CRD). The …
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