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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of … is only available for a fraction of extant actinobacterial diversity. The article adds to the compendium … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … DSMZ on IMG/M Data Portal …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving … a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and … ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the …
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … and analysis.   To put these efforts into perspective, we caught up with JGI staff, collaborators and users to see how …
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Alabama A&M Interns Access An Abundance of Knowledge
… In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an internship program to … DOE RENEW initiative, undergraduate student Ti’Yanna Watson and graduate student LaMonika Dent worked with JGI … mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant …
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Data Policy
… Data produced and released by the US Department of Energy … are subject to the following Data Policy. It is our mission to support open data and information sharing. We also … is granted to proposal PIs, Co-PIs, and collaborators of any given proposal. Third parties (often referred to as …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like popcorn is literally … growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, … ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … well, randomly,” Kyrpides explained. “Replicating that 100 times would have been almost impossible.”  When the team was …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles … forests and the atmosphere. The team learned that some bacterial families carry genes for degrading monoterpenes … ) conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …
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