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Large-scale replicated field study of maize rhizosphere identifies heritable microbes
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Cultivating Symbiotic Antarctic Microbes
… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … researchers have been able to gain further insights about how microbes have adapted to thrive in polar ecosystems. The … by the European Commission (EMBOCOFUND2012, GA-2012-600394) and supported by Marie Curie Actions. … Unexpected …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … (DE-AC02-05CH11231 to J.F.B.). The work ( proposal doi: 10.46936/10.25585/60000800 ) conducted by the U.S. Department of …
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The endosymbiotic box of protective tricks
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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … Eloe-Fadrosh noted that it was a nice example of “big-data” mining to gain a deeper understanding of the data and … talk about genome mining using the GEM catalog in  this episode of the JGI  Natural Prodcast . Using this massive …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the story behind that giant assembly from Lake …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for … co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the human genome … al.  2024.The complex polyploid genome architecture of sugarcane. Nature 628, 804–810. Sreedasyam, A., Plott, C., MdS …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS proposals have helped advance her … range from traditional single cell sequencing and mini-metagenomics to more targeted approaches, such as … to their resources. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… been revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great … evolved these really tough cell wall materials that keep microbes — and the enzymes that would be produced by … kinds of supplies in the quest to break down plants.  In 2016, her team leveraged transcriptomics and other assays to …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … mechanisms they had identified. For example, in comparing how liverwort and flowering plants had adapted to their … … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of …
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Fishing for Novel Cellulose Degraders
… by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … their functional roles in their community. This study shows how the function-driven, single-cell screen can uncover … and Environmental Research under contract DE-FC02-07ER64494. EG is supported by the NIGMS Biotechnology Training …
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Yeasts and how they came to be
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