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Minimum Information about an Uncultivated Virus Genome (MIUViG)
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director … human chromosomes. After successful completion of the human genome project, Professor Dr. Rokhsar ’s team has continued … Evening Lecturer, Marine Biological Laboratory 2000 John Simon Guggenheim Fellow 2000-present Program Director, …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories … Leahy and the JGI’s Rekha Seshadri in this JGIota, a Genome Insider podcast minisode. To date it is the single largest …
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Marine Microbe Contains Multitudes
… periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, … (above 200 m, or 656 ft), and have genes to support a photoheterotrophic lifestyle. In other words, they snack on … to.   … This research was supported by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … possible to do something that the field refers to as “genome mining”. So, if you can sequence the DNA and actually … hear more science from her, check out her podcast, Genome Insider. She talks to lots of great scientists outside of …
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Conservative taxonomy and quality assessment of giant virus genomes with GVClass
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Publication Policy
… assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI … be found at the top of the proposal info page on the JGI Genome Portal. You can navigate to the proposal info page using any of the below methods: Search the Genome Portal Navigate to the JGI Genome Portal . Click …
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Data Ecosystem
… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …
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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of … of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs … al. 2022. Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology …
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Webinars on Offerings & Capabilities
… use our data portals here.  … … Shining a Light: Advanced Photon Source Capabilities for FICUS Research shows … how to tap into the capabilities of the Advanced Photon Source when applying to the FICUS call. (Feb. 21, …
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Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
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Blake Simmons
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