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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … in developmental and disease processes in the human genome. In addition to his appointment at the DOE Joint …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve covered the specialized software and …
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … on video) 4.  Q: Will it support custom columns in the future? For other things than assembly size or gene count? … but we are open to a dialogue about a possible rationale. 8.  Q: Is there any way to get the most recent tree deployed …
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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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Viral dynamics in a high-rate algal pond reveals a burst of Phycodnaviridae diversity correlated with episodic algal mortality
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the … oxidation metabolisms. They also identified a set of 38 marker genes that serve as a core set of genes present in …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … to build and position JGI as a leading integrative genome science user facility.  In addition to serving as JGI … of Energy biology programs, and represents the Joint Genome Institute at national and international forums. …
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JGI@25: Studying Sorghum’s Survival Skills
… and thrive — some varieties grow their leafy stalks 16 to 18 feet into the air. Beyond being a staple grain eaten … climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … including traits useful for adapting to harsh conditions. 2019: JGI and collaborators analyze the sweet sorghum RIO …
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Fungus Fuels Tree Growth
… partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Program in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team … for the DOE. The work conducted by the DOE Joint Genome Institute, a DOE Office of Science User Facility, is …
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JGI@25: Roots of a Mutualist Relationship
… help solve energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. … Genome Inside: THE Bioenergy Tree …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the …   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 … tree, had a gene annotation completement level of 93.8%. The 2025 assembly has a gene annotation completement …
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A More Intuitive Phytozome Interface
… Phytozome accessible as an interactive website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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