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… has resulted in several papers, including one in 2018 on the discovery of miniature CRISPR-associated proteins … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … in a Two-Protein-type V-C CRISPR System. Mol Cell. 2019 Feb 21;73(4):727-737.e3. doi: …

Metagenome-assembled archaeal genomes provide new insights into … metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the … oxidation metabolisms. They also identified a set of 38 marker genes that serve as a core set of genes present in …

… assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI … be found at the top of the proposal info page on the JGI Genome Portal. You can navigate to the proposal info page … for your proposal using your proposal's WIP ID (ex. 503582). Click on the correct proposal name on your search …

Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … oversight at the JGI, and plans for the development of future capabilities. Responsibilities include strategic … Expanding the Genomic Encyclopedia of Actinobacteria with 824 Isolate Reference Genomes. Cell Genomics 2: …

… and thrive — some varieties grow their leafy stalks 16 to 18 feet into the air. Beyond being a staple grain eaten … climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … including traits useful for adapting to harsh conditions. 2019: JGI and collaborators analyze the sweet sorghum RIO …

Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the … pathogen biology. Du Toit invited JGI to write half of the 2019 Genome Watch articles as a way to expose readers to a …

Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of … global metagenomics. Nature . 578:432-436 Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and …

This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve covered the specialized software and …

I was introduced into what a government lab and what this future could look like. Edward Lu : I think this internship is gonna help me in the future because it just showed me when people have a goal and … bioformatics, so that’s what I’m gonna take with me to the future.  Shari Larsen : I didn’t grow up with computers, and …

Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research … Eberhard Karls University of Tübingen, Germany … 2018-2023 Highly Cited Researcher, Biology and Biochemistry, … Member for ISME J (Senior Editor 2016-2021), Peer J (2015-2019), Scientific Data (2017-2019). Reviewer for major …

… on computational and experimental approaches to study genome regulation in human and other vertebrate genomes. … from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer … regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered Root Bacteria Release Plant-Available …