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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… National Science Foundation Integrative Graduate Education and Research Traineeship Program, and Montana …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… teaches the A-Level Advanced International Certificate of Education (AICE) Biology class at Boca Raton Community High … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Dan Rokhsar
… 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome … Department and in 2002 he became a Professor of Genetics, Genomics and Development after his research interests …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to … Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 … 8(1), 2184 doi: 10.1038/s41467-017-02292-8 Genetics and Genomics of Brachypodium. 2016 Vogel, J.P. Ed., Springer, …
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JGI@25: From Life at the Extremes to Editing Genomes
… led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection … Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: 10.1016/j.molcel.2020.06.022. Wright AV et al. …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… across the species. These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). Lovell et al. focused on the 4X variety, largely because it’s been prioritized in … After our team finished analyzing the diversity present in 4X switchgrass, we were surprised by the number of 8X …
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Ian Blaby
… analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral … to reveal the functional links between gene networks. BMC genomics. 20:12. 2019 Anderson et. al., Exploiting algal …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His … of community-building efforts in the field of viral ecogenomics. For this role, Dr. Roux can rely on more than 10 … years of expertise in the fields of virus ecology and virus genomics, where he has engaged in collaborative, …
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Uncovering Novel Genomes from Earth’s Microbiomes
… expanding the known diversity of bacteria and archaea by 44%, is now available and  described November 9, 2020 in  … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building upon these resources, KBase, a …
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A Collaboration to Improve Plant Genome Annotations Across Species
… resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene … sets, such as sorghum internode time course data from 4 different genotypes by Dr. John Mullet; Dr. Tom Juenger … aimed specifically at “Gene function” and “Functional genomics.” We will keep updating the Gene Atlas with curated …
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Tanja Woyke
… research at the DOE Joint Genome Institute in 2004. The main object of her research was the symbiont … deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, she switched gears from metagenomics to single-cell genomics, which is now her primary …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen interest in the bioenergy and … of this field and bring it to the attention of the wider genomics community. Jan. 13 workshop: BER Plant Genomic …
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