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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… with JGI’s help. Additionally, the Marsarchaeota comprise 20-50 percent of the iron-oxide microbial mat communities in … of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The work was supported by Pacific Northwest … National Science Foundation Integrative Graduate Education and Research Traineeship Program, and Montana …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome … Arthur R. Marshall Loxahatchee National Wildlife Refuge, a 226-square mile area of the northern Everglades in Palm … teaches the A-Level Advanced International Certificate of Education (AICE) Biology class at Boca Raton Community High …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior … served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development … 8(1), 2184 doi: 10.1038/s41467-017-02292-8 Genetics and Genomics of Brachypodium. 2016 Vogel, J.P. Ed., Springer, …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection …
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Calculating the Costs of Multiple Switchgrass Gene Copies
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Ian Blaby
… Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint … analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … of community-building efforts in the field of viral ecogenomics. For this role, Dr. Roux can rely on more than 10 … virus diversity and host interactions through global metagenomics. Nature 578, 432–436. …
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Uncovering Novel Genomes from Earth’s Microbiomes
… in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building upon these resources, KBase, a …
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A Collaboration to Improve Plant Genome Annotations Across Species
… resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … aimed specifically at “Gene function” and “Functional genomics.” We will keep updating the Gene Atlas with curated …
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Tanja Woyke
… postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research was the symbiont … deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, she switched gears from metagenomics to single-cell genomics, which is now her primary …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen interest in the bioenergy and …
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