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How to Target a Microbial Needle within a Community Haystack
… microbes from complex environmental samples. The Science A team led by researchers at the Max Planck … worked with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to … University campuses for biotechnology education as part of a course-based undergraduate resource experience. Hear …
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology company Truss has … … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Webinar: Introducing the BioSANS capability
Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how … (BioSANS) instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, …   … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… laboratory ecosystems to help transition microbiome science from largely observational to reproducible … studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for … collaborations, and charting the future of microbiome science. Organizers The EcoFAB 2025 Conference is organized …
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Partnerships: Myco-Ed
DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The Mycocosm portal supports the annotation, comparative analysis, and distribution of fungal genome datasets. It … KBase integrates a variety of data and analysis tools, from DOE and public resources, into an easy-to-use platform that …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max …
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CSP Functional Genomics
… function.  The emphasis is on projects leveraging JGI’s DNA synthesis and ‘omics capabilities to enhance … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … will be externally peer-reviewed for scientific merit, DOE mission relevance , proposed data usage by the …
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful … genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 Ernest Orlando Lawrence Award , one of DOE’s highest honors! Tringe, a microbiologist, was … Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s …
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