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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, … D are available for comparative analysis on JGI’s plant data portal  Phytozome , which is a community repository and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Supporting Global Research into Actinomycetes
… other related organisms, requires using more specialized tools, skills and protocols,” explained Hiroshi Otani, an … a scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … user-available API’s offer a space to not just store data, but for the community to discuss those data and make …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Laboratory, and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 … will ultimately be published on the  JGI plant data portal Phytozome . …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). … the virus and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes distinguished …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million years … The HAL2 and FIL2 genomes are available on the JGI’s plant portal Phytozome .   …
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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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Making a Lichen Together
… For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could help inform efforts at … variation in its progeny. The study’s transcriptomic data also identified many genes potentially important for …
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Sequencing Submission Requirements for DNA Synthesis
… GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, … order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Prepublication data sharing
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Clustering Categorical Data
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