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Natural Prodcast Episode 23: Aaron Puri
… restricted niche. And they do need broad host-range genetic tools so it’s more complicated than working with something … thing I’ve learned is that when JGI gives you a ton of data you better have someone really smart to be able to … And so now that’s what I’m joking about having a lot of data. It’s a lot of metabolomics data sets. So what have we …
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Frequently Asked Questions: Proposal Submission
… begin, and all CSP proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to … The deliverables can range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, depending on the specific product types covered in the …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept … MycoCosm Data Portal …
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Mission
… provide advanced genomic capabilities, large-scale AI-ready data and professional expertise to support the global … this mission by enabling large-scale genomic discoveries, data integration, and AI-driven analyses that convert …
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A Plant Root Atlas for Tracking Developmental Trajectories
… and combining the information with previously published datasets. The work was  recently published in the journal  … “This represents the largest integration of single-cell datasets in plants and provides a foundation for still … Strategic Plan. The present paper provides a foundational data set that is now available through a new  single-cell …
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CSP Large Scale Call
… for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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You Can Move, But You Can’t Hide
… created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. … geNomad is now accessible through the National Microbiome Data Collaborative’s EDGE platform. The Impact In order to … for identifying viruses and plasmids. Until now, most other tools have focused on identifying only specific plasmids or …
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Offerings & Capabilities
… capabilities to help advance their science by generating data in three overarching categories: DNA Sequencing , … phenotypic, metabolomic, imaging, sensor, and other data produced at scales amenable to statistical analysis. To … new methodologies to enhance the integration of various data types.  …
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UC Merced Interns Reflect on Their JGI Summer Projects
… worked on ranged far and wide — from implementing new data visualization tools, to using natural language processing techniques to … a fruitful experience for mentors and students alike. Tools like Slack, Google Docs, and GitHub enabled virtual …
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Network Modeling of Complex Data Sets
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The parallelism motifs of genomic data analysis
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies of …
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